file upload

Upload fasta seq file here

fasta sequence data input

Paste the fasta sequence data here ( example: demo )
>AF282387 Filobasidiella neoformans calcineurin B regulatory subunit (CNB1) mRNA, complete cds ATGGGTGCCGCTGAATCCTCCATGTTCAACTCTCTGGAGAAGAACTCCAACTTCTCAGGACCGGAGCTTA TGAGGTTGAAGAAGAGGTTCATGAAGCTTGACAAGGACGGTTCCGGATCGATTGACAAAGACGAGTTTCT TCAGATCCCTCAAATCGCGAATAACCCTTTGGCGCATCGAATGATAGCAATCTTTGATGAAGATGGAAGT GGAACGGTTGACTTCCAAGAATTTGTCGGAGGTTTGAGCGCTTTCAGTAGTAAAGGAGGTCGTGATGAGA AGCTGAGATTCGCTTTCAAGGTGTACGACATGGATCGAGACGGCTACATCTCTAACGGTGAACTGTATCT TGTGTTGAAGCAAATGGTCGGAAATAACCTTAAAGACCAACAATTGCAACAAATTGTAGACAAAACCATC ATGGAGGCTGACAAGGACGGGGATGGAAAGCTCTCTTTTGAGGAGTTCACACAAATGGTCGCCAGCACAG ATATTGTGAAGCAAATGACCCTTGAAGATCTTTTCTAA >Tsix_mus NR_002844.1 Mus musculus X (inactive)-specific transcript, antisense (Tsix) on chromosome X GTGTGTTCATGCGTGCGCACGTGTACCCGTGCGTCCACACTCCGCCAGCACGTGTGCTAGCTTGCAAGTT TTCAGTTTGAGTACAGACACCAGGCCATAGCCCAATGGCAGCAGTGACAGGGAGGACCGTGGCAGCATGT TACAATCAGAAGACAACTTCCGGATTTTCACTCTGTCCTAAAAAGGTGGTCAAGTGTGCTAACCACACCC TCTCAGCAGGATCCCGCGCCTCAAGAGCCTTAGGTCCCGCCCCACACTCCCTCAAACCCTCAGTGCAGCG CTTGTGTCAGGCGCAATCTCGCAAGATCCGGTGAGGCGCTACGTCGTGCTCCACTCGGTCCCAAAAGTAC CTGCAAGCGCTACACACTTGCGCTCGGCGCCCTTGCTCTGTTCTCACTTTCCGAGATATCCACGCATCTT GAGTCCTGCATCCACTCCCGGGAGGCGGCTGCGGCAAGCGCGTGATGGAAGAAGAGCGTGATAGCCAGCT AGACAGGTGGCCAGAGCGGAGCGGACAGTGGAGCGATGGCTACGTGCTTGCGGGACAGCGGAAGAGATGG TTAAAGTGATTGCCAAGCAGCAGAAAGATTCCTAAAATGCTTGCCAGCTATGCGGAGATGAAGGTGAGGT TTCAATGATTTACATCGACCAAGAACCCGCAGCCTCGGTCTCTCGAATCGGATCCGACATCATCCAACAC TTCAGTGTTAGAATTGCAAGCATGCGCTCTCCCGACCTGGGCAGGCACTTCGAAAAAATGATGACTAAAG ACACACGTGAAGTACCAAGCGAAACTCACGTCCTTATGGGACAGTGACTCATCACAGTCTAATTCCATCC TGGCCACCAAGCAATAATGCACATTTCTAACTGGAAGTCAAGCAAACACCAACACTTTCACACTTGTGCC CATTTCTGACGAGTTACGTCAAGTGGCAACCAACACTTCCACTTAGCCTTGCCTCAGCTTCGAGTGGCAC AAGGTAGGACCAACCACACCCTACCATAATGCACCAAGTGTACCCTCGGGCAAAGCCCGCCAAGTAGCTA AAGCCCGCCAAAAAAAAAATCACTGAAAGAAACCACTAGAGGGCAGGTCACATGACTTCCGCCATCTTAG ACACATTCAAGAGCATGTGCCACCTCTCCAGGCTAACTCAGACATGAAGCTGACATGTGACACACAAAGC CCTTTGCGTTATACCGCACCAAGAACTTGAGCCGCCATCTTTTCCTGTACGACCTAAATGTCCTATAATC CATTGCTACACACCAGAACAAAGATTGGGCTGTCGAGCCTCGGGTGGAGCCCCCGAGCCGCCATTTTATA GACTTCTGAGCAGCCCTTAAAGCCACGGGGGACCGCGCCAGGGGTCCATATGCACACACACCCTGCCCAA TCCCCACACCCACGCTGAGCCCTATCCCCTAGTCCTCTGCGGCTTCCGCGCAACACCGCACACTAATACG AGCACTCCTTGGCTTTCTCTTCCGGCTAGCACAACCCCGCAAATGCTACCACAAATCAAGGCGAATCCCG CAACCCCGCACATATAAAGAAAGCCTTTAGCTAGCGCAGCGCAATTGGTTGCTTTTATCCAGTCCGCTGT GCTCCTCGGTGTCCTAATTCTTGGCGTAACTGGCTCGAGAATAGCCGTATCACGCAGAAGCCATAATGGC GGACGCGGGCTCTCCACGCCCTGAACACCCACTCAGTTTAAGAGCAAAGTCGTTTTTCTAAGCCATAGGT TCACTCACACAGCACCAAACGATCAGCAGCAACAGTACACGCAAATAAGAGGCATAGATATTCCAGGTAG TGCAATAACTCACAAAACCATATTTCCATCCACCAAGCCCCGTTGGGCCTGTAAAAAAAAAATTTAAAGC AGGTATCCACAGCCCCGATGGGCAAAAGAAAAAGAAAAAAAAATAATAACAGCAGGTATCCGAGGCCCCG TTGGGCATGGGAAAAAAAGACTAAACGCAGGTATCCGAGGTCCCGATGGACCGAGAAAGGTTTTTTTTTT TTTTTTTTTTTTTACAAAAAGCAGGTATCCATGGCCCCGATGGGCTAAGGAGAAGAAAAAAAGAATAAAA GCAGGTATCCACAGCCCAGATGGGCAAGTTTAGAAAAAAAAATAATAAGAAAAAAAAAGAATGAAAAGGC AGGTAAGTATCCAAAACCCCGTTGGGCATGGAATGGCGGGGAGGACACACAGGTATCCGTGGCCCCGATG GGCAAGATTATATAAACAATGAAAGAAAGGTAAGTCCACCATACACACACAAGTATCAACCAAAAGGCAC AACAAAGAAATATTCCTTAAAAATGAAAAATTGACTGAAAATATTACAAATATCAAAAAGTATGGAGGAC ATGTCAAAAAAAAAATCTTACCAGAACATATCAAAACGTCAAAAATCTCGTGGAATTTTGATATGTTTTC TTAAATAAGCCATAAGGCTTGGTGGTAGGGGAACTAAAAATGTTCCCCCAAAGCTCCTTAGATGGAGAGA AACCACGGAAGAACCGCACATCCACGGGAAACGAGCAAACATGGCTGGAGCAAGCCGTTGCACGCCTTTA ACTGATCCGCGGCGCTGAAGGCGGAGAGACCAGAAGAGGAGTGGCCACAAAGATTGCAATTCTGACATCT TATTGGACCTTTAGGTCTAACTATATTATAAAAAAATTAAAATGAATAAAGATGGAGGTACGTAAGCTCA GTGACATGACGCGTGAATTTCATTATTTTGCGCGATAATGAAGGATTATCCTATTTTACAGCTAAAAACG TTTATGTAGAACTTCACATAAACATTTGGGTGTGTACATTTAGCACACACCTGTCTATGCAAAATTTCAA TATATCTTCTACTTGGACAAACCATGTGTCGCTCCGGTCTTGGACACTAGAAGTTCTTCTGCATTAGTTG GCGACCTCAGATGAGGAGAGGAAAGGGTAGAAATGCCTCACAAAATGGCTCCTTGGTTCCTAAATTATCA GAGTATTAGTTGTGACCGATTTGGAGGGCTTACGCTCATAGTTTTGGGTCATTGGCATCTTAGTCTTTCT CTGGGAACCTGGTGACTCCATACCTTGGGACAAAAACGCACTGAAGACGTTACTAGCTAGCAGTAATGAA AAATAATTCCTAAATGCCAAAGCAAAGCCTTAGGGAATAATAGCTCATTGGTATCTTACTCGCCCCAGAG ACACTGCTAACTTAAAAGAACTGTCAAATTTTGTTAACTGTCAAACTATGAATATCCACATGAAAGAGAT CAGACACCCTGGGTATTAGAAAATCAAAGGATATGTTGTCTCGTTGATCACGCTGACAAATAATTCACAG TCTGTTCTAAGTTCCCTTTAGGCGTCCCATGAATAATAAAGGACACAAAATTGGTTTGCTTATGGACGAT CAAAGTGCCAGCAATTCAGTAATCTTACTATTGAGGTGGTTCAGGTAGGGATGGAAAAATATCTGCTACA AAATAAACAGTTTCAACCAAAAGAAAAACAAATTAACAAGGTAAATAAATGATGCACACAGACTGAATAA ACCAGCAGGTGGCAGCATGAATCTTTCCAAGGCATCTGAAGCCAAACTTGGAGTGCAAAAGGATTCCTAT CTGAATTGAGAAGTAAAGGTTACTTTGTCTAACTTTAGTTGACAGAGCGATCAGGATCAGAGTAACAAGC ACACCAAAAGCATCACCAGTGAGAAGTCACATAGGACATATTAGGGAAAAAAGACCCAAGGAAGGGCTCT TCACAGCTAAGAGCACCTGGCTCCACGATGGATATGGCTTTGTATAAACGAGAACTTCTAAATGAGCTGT ACAAAGAGAATTTAGAACTTGCGAGGTACTGGTCACAGATTATGCAAGCCAGTGTATCATTTTTGTGGGG ATGCTAGAGAGAATCATCAAATTAAAGAGTTAAATTTAGTCTCTGTGTTTTACTTAGTCCCAATTCTTGC AAAGGTCATCATTCTTTCTCACACCGTGTACATCAAGGTATGTCAGGTTTCGGGGACACTTTTTAGTCTT ATCACAAGAAAGCATGAAGGGATATGTGCTAAAACTCAGTTCCTGGGCTGGAGAGATAGCTCAGTGGTTA GGAGTGCTGACTGCTCTTCCAGAGGGCCTGAGTTCAATTCTCAACAACTTCGTTGTGGCTCACAGTCATC TGTAGTGGGGGATCCGATATCTAACCTTCTTCTGATGTATCTGAACAGTGACCGACAGTGTACTCACATT AAATAAATATTTTTCTAAAAAACACCTCCA

additional blast search

NOTE: The UTRdb and RNAdb blast search is NOT a part of the CPC algorithm. We make the service avaliable here to provide additional information for users. And users should know that switching on these options might slow the speed a little.

Search UTR-DB ( optional )
Search RNA-DB ( optional )

your email

Email:    ( optional )

submit

press to run